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bifurcations

AUTO scripts to generate bifurcation diagrams for various ODE systems

bold_fmri

coupledcells

This project uses massively parallel simulations to investigate the relationship between arterial geometry, the transport of information via ionic species through the gap junctions along arterial wall and the onset of atherosclerotic plaques.

crdmodel

Curvilinear Reaction Diffusion Model

dbiharmesher

DBiharMesher is designed for generating quadrilateral surface meshes for bifurcating vessels. The core of the DBiharMesher is a VTK filter/wrapper for biharmonic equation solver Dbihar written in Fortran.

envy-you

Brains trust NVU model

oo-nvu

Matlab implementation of the NVU model.

parbrain

uncertainty-quantification

This repository stores code, papers and other text files describing the work with Pierre Gremaud and Joey Hart from North Carolina State University. The work looks at the sensitivity of parameters modelling neurovascular coupling with an initial view to developing a stable model that compares well with experimental data (from Dr Jason Berwick (Sheffield Univ, UK)).

vsmc-cc-edc

VSMC coupled cells model with electrodiffusion coupling

vsmc-cc-lc

VSMC coupled cells model with linear coupling

vsmc-sc

Vascular Smooth Muscle Cell (VSMC) code for simulating intracellular calcium dynamics.

vtktovtulcc

A small utility to convert legacy format .vtk files produced by the legacy Coupled Cells code.