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repos: 85.0 gists: 0.0

Name: Biomedical Knowledge Engineering Group

Type: Organization

Bio: Older legacy organization for Knowledge Engineering work by Gully Burns at the Information Sciences Institute (USC). See @GullyBurns

Location: Information Sciences Institute, Marina del Rey

Blog: http://bmkeg.github.io

Biomedical Knowledge Engineering Group's Projects

amr-ld icon amr-ld

A Python library for mapping AMRs to linked data formats (such as RDF and JSON-LD). This work is heavily derived from Naomi Saphra's 'AMRICA' library (https://github.com/nsaphra/AMRICA) and SMATCH

bigmechkefedjavaworkbook icon bigmechkefedjavaworkbook

Simple Java applications that provide high-level processing based on KEfED for DARPA's Big Mechanism program.

bioscholarproject icon bioscholarproject

The overall project folder for the BioScholar system, described in Russ et al. 2011(http://www.biomedcentral.com/1471-2105/12/351). Version 1.0 of this project is the distribution associated with this paper from our Google Code site(https://code.google.com/p/bioscholar).

bmkeg-as-parent icon bmkeg-as-parent

Parent project for all Flex project developed within our systems. Primarily for use with VPDMf.

bmkeg-parent icon bmkeg-parent

This is where we manage maven dependencies, versions and repositories for all our development projects. This serves as the parent for all subsequent work.

bmkeg-utils icon bmkeg-utils

Utilities for bmkeg libraries (includes file, zip, spring and other miscellaneous tools).

cosid_linkage icon cosid_linkage

Python scripts to run evidence extraction pipelines from text annotated with discourse tags from SciDT. Methodology is based on the CoSID frames ('Cycles of Scientific Investigation in Discourse')

deepdig icon deepdig

Implementations of the Domain Insight Graph (DIG, http://dig.isi.edu) formalism applied to advanced, complex scientific subjects (systems level neuroscience, systems biology, etc.).

digitallibrarydao icon digitallibrarydao

The VPDMf-driven library for all functionality pertaining to literature citations and documents.

elasticnlmresources icon elasticnlmresources

Systems for mapping National Library of Medicine (and other large-scale publishing resources) into Elastic Search Knowledge Bases for indexing and retrieval.

erudite-horseman icon erudite-horseman

Building scraping tools to aggregate metadata about data science courses using the node horseman library

evlgit icon evlgit

Pron: 'Evil Git'. An idea to implement a system of evaluation on GitHub repositories derived from the BIRN community's framework of evaluation for their software projects (which in turn was derived from the CMMI-DEV 1.3 criteria).

exp-parser icon exp-parser

Code for extracting various kinds of frames from experimental descriptions

friesworkbench icon friesworkbench

Machine reading workbench developed by the FRIES consortium of the DARPA Big Mechanism Program

friesworkbenchclientapp icon friesworkbenchclientapp

Flex application supporting a machine reading workbench developed by the FRIES consortium of the DARPA Big Mechanism Program

friesworkbenchproject icon friesworkbenchproject

High-level project for a machine reading workbench developed by the FRIES consortium of the DARPA Big Mechanism Program

kefedclientcomponents icon kefedclientcomponents

Robotlegs Flex components for the Knowledge Engineering from Experimental Design (KEfED) User Interface.

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