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Brandon Malone's Projects

as-asl icon as-asl

This project incorporates the auto-sklearn toolkit into a solver runtime prediction framework. The predictions directly yield a solution to the algorithm selection problem.

automl-utils icon automl-utils

Utilities for AutoML in python. This mostly contains wrappers for working with auto-sklearn and related projects, including the algorithm selection framework provided by the ASlib project.

mimic-preprocessing icon mimic-preprocessing

This repository contains the source code necessary to pre-process the MIMIC-III data to reproduce the results in the paper "Learning Representations of Missing Data for Predicting Patient Outcomes".

peptide-encoder icon peptide-encoder

An encoder for peptides (short amino acid sequences) based on BLOSUM similarity.

pylifesci icon pylifesci

This repo contains bioinformatics-related scripts and helpers.

pyllars icon pyllars

This repository contains supporting utilities for Python 3, with an emphasis on data science tasks.

urlearning-cpp icon urlearning-cpp

This c++ project implements a number of algorithms for learning Bayesian network structures using state space search techniques.

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