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ai-thoughts

A repo to organize thoughts on AI

an-introduction-to-applied-bioinformatics

Interactive lessons in bioinformatics.

anita_data

bermudagrass_microbiome

This repository contains all the necessary data and code to replicate Haymaker et al., 2022 "Evidence of Plant-Arbuscular Mycorrhizal Fungal Selectivity in Genotypes of Bermudagrass."

brotec

cdi_dl_workshop

A collection of tools for image classification and recognition using deep transfer learning

comm_ecology

Data analysis for Community Ecology course Fall 2014 (Serengeti data)

computing-for-ai

deep-learning-ars

dixie-fire

drunken-tyrion

GMO Sleuthing

drunken-wight

Elevation gradient and Serengeti data analysis

ebolyen.github.io

graphing

A workflow for graphing

mcnorvell

Preliminary data anlysis for Michael McNorvell project on 18S and ITS sequencing.

nxwater

Nitrogen by water experiment

nxwater-amf

Code for data analysis of arbuscular mycorrhizal fungi. Experiment was conducted in 2021 near Akron Colorado.

nxwater_bacteria

Code for all data preparation and analysis for bacteria sequencing data within the ARS NxWater Akron experiment

pandas-tutorial

Short pandas tutorial for code review.

python-for-ai-ars

sequencing_comparison

Comparison of Illumina and MinION sequencing platforms

temple-phosphorus

Repository for data and data analysis for Temple Phosphorus trial experiment

turbo-happiness

Serengeti work