boxiangliu Goto Github PK

abbrev

alphafold

Open source code for AlphaFold.

antseq

Cheap Ancestry Determination with Targeted Sequencing

bioinformatics_toolbox

This repo contains Bosh's personal bioinformatics tools with detailed comments.

boxiangliu.github.io

Boxiang's academic website

brt

bioinformatician's R toolbox

covseq

CoV-Seq: COVID-19 Genomic Sequence Database and Visualization

cpi_contact

Compound Protein Contact Prediction

deeplearningbook

MIT Deep Learning Book in PDF format

deepregret

deeptools

Tools to process and analyze deep sequencing data.

dleps

A Deep Learning based Efficacy Prediction System for drug discovery

enformer

Forked from https://github.com/deepmind/deepmind-research/

enformer-pytorch

esm

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

fairseq

Facebook AI Research Sequence-to-Sequence Toolkit written in Python.

gnn_dti

grasp

hcasmc_eqtl

idr-notebooks

Jupyter Notebooks for the Image Data Resource

intro-to-genomics

Course material for "BIOS 201: Next-generation sequencing and applications"

leafcutter

Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae Kyung Im, Jonathan K. Pritchard

left2right-pointer-parser

locuscompare

LocusCompare is an interactive visualization tool for comparing two genetic association datasets.

locuscompare-demo

Demo version of LocusCompare

locuscomparer

LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.

manhattan

ggplot2-based Manhattan plot

markov-random-field-project

This project has two parts. In part one, we use markov random field to denoise an image. In Part two, we use similar model for image segmentation.

mutational-semantics-neurips2020

Learning mutational semantics

named-entity-recognition-with-bidirectional-lstm-cnns

Named-Entity-Recognition-with-Bidirectional-LSTM-CNNs