Name: Boxiang Liu
Type: User
Company: National University of Singapore
Bio: Asst. Prof. @NUS, ex-Staff Research Scientist @Baidu, bioinformatics Ph.D. @Stanford. Working in the intersection between AI/ML and biology/medicine.
Twitter: boxiangliu
Location: Singapore
Blog: boxiangliulab.com
Boxiang Liu's Projects
Open source code for AlphaFold.
Cheap Ancestry Determination with Targeted Sequencing
This repo contains Bosh's personal bioinformatics tools with detailed comments.
Boxiang's academic website
bioinformatician's R toolbox
CoV-Seq: COVID-19 Genomic Sequence Database and Visualization
Compound Protein Contact Prediction
MIT Deep Learning Book in PDF format
Tools to process and analyze deep sequencing data.
A Deep Learning based Efficacy Prediction System for drug discovery
Forked from https://github.com/deepmind/deepmind-research/
Evolutionary Scale Modeling (esm): Pretrained language models for proteins
Facebook AI Research Sequence-to-Sequence Toolkit written in Python.
Jupyter Notebooks for the Image Data Resource
Course material for "BIOS 201: Next-generation sequencing and applications"
Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae Kyung Im, Jonathan K. Pritchard
LocusCompare is an interactive visualization tool for comparing two genetic association datasets.
Demo version of LocusCompare
LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.
ggplot2-based Manhattan plot
This project has two parts. In part one, we use markov random field to denoise an image. In Part two, we use similar model for image segmentation.
Learning mutational semantics
Named-Entity-Recognition-with-Bidirectional-LSTM-CNNs