Name: BrainGlobe
Type: Organization
Bio: Interoperable Python-based tools for computational neuroanatomy
Twitter: brain_globe
Location: United Kingdom
Blog: https://brainglobe.info
General information, resources, high-level issues and dicussions for the BrainGlobe project. For more details see brainglobe.info. For developer meeting summaries, see the Discussions tab - developer meetings are open to anyone, join the Zulip chat to participate.
.github
Common templates for BrainGlobe repositories.
actions
Re-usable GitHub Action scripts
bg-atlasgen
Tools for packaging atlases for use with BrainGlobe
bg-brainrender-gui
A GUI built on brainrender: visualise brain regions, neurons and labelled cells.
bg-gitbook
Mirror of the brainglobe GitBook page
bgviewer
Visualisation and exploration of brain atlases
brainglobe
General information, resources and dicussions for the BrainGlobe project.
brainglobe-atlasapi
A lightweight python module to interact with atlases for systems neuroscience
brainglobe-heatmap
Rendering anatomical heatmaps with brainrender and matplotlib
brainglobe-meta
(Meta-)package repository for BrainGlobe's Python tools for computational neuroanatomy.
brainglobe-napari-io
Read and write files from the BrainGlobe neuroanatomy suite
brainglobe-registration
Registration to BrainGlobe atlases in napari using Elastix
brainglobe-segmentation
Segmentation of anatomical structures in a common coordinate space
brainglobe-space
Anatomical space conventions made easy.
brainglobe-stitch
A napari plugin for stitching large tiled 3D imaging datasets
brainglobe-template-builder
Build unbiased anatomical templates from individual images
brainglobe-utils
Shared general purpose tools for the BrainGlobe project
brainglobe-web
brainglobe.info website
brainglobe-workflows
Workflows that utilise BrainGlobe tools to perform data analysis and visualisation.
brainglobe.github.io
brainglobe.info website
brainreg
Automated 3D brain registration with support for multiple species and atlases.
brainreg-napari
Automated 3D brain registration in napari with support for multiple species and atlases.
brainrender
a python based software for visualization of neuroanatomical and morphological data.
brainrender-docs
brainrender-napari
A napari plugin to render BrainGlobe atlases and associated data as layers.
brainrender_paper
Code for recreating the figures in the brainrender paper (Claudi et al. 2020)
cellfinder
Automated 3D cell detection in very large images
cellfinder-core
Standalone cellfinder cell detection algorithm
cellfinder-napari
Efficient cell detection in large images using cellfinder in napari
cellfinder-visualize
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
Django
The Web framework for perfectionists with deadlines.
Laravel
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
Microsoft
Open source projects and samples from Microsoft.
Google
Google ❤️ Open Source for everyone.
Alibaba
Alibaba Open Source for everyone
D3
Data-Driven Documents codes.
Tencent
China tencent open source team.
