brendanf Goto Github PK
Type: User
Company: University of Jyväskylä
Location: Jyväskylä, Finland
brendanf's Projects
bioconda-recipes
Conda recipes for the bioconda channel.
bistorta_vivipara_translocation
Bioinformatics pipeline for "Experimental evidence on the influence of root-associated fungi on plant growth along altitude"
brendan
Short utility functions
brms
brms R package for Bayesian generalized multivariate non-linear multilevel models using Stan
clustermq
R package to send function calls as jobs on LSF, SGE, Slurm, PBS/Torque, or each via SSH
conda_r_skeleton_helper
Cleaning up Conda r-packages
crew.cluster
crew launcher plugins for traditional high-performance computing clusters
dada2
Accurate sample inference from amplicon data with single nucleotide resolution
deadwood_restoration
Bioinformatics pipeline for 'Natural deadwood hosts more diverse pioneering wood-inhabiting fungal communities than restored deadwood'
drake
An R-focused pipeline toolkit for reproducibility and high-performance computing
fungorum
R package to access records from Index Fungorum
funguild
FUNGuild: parsing OTUs into functional guilds
funguildr
Look Up Guild Information for Fungi in R
gefast
Generalised Fastidious Swarming Tool
ggtree
:christmas_tree:Visualization and annotation of phylogenetic trees
gssp
Global Spore Sampling Project
inferrnal
R Interface to Call Programs from Infernal RNA Covariance Model Package
ips
R Interfaces to Phylogenetic Software
lsux
Cut rDNA sequences into domains using covariance models
mptp
mPTP - a tool for single-locus species delimitation
nng-feedstock
A conda-smithy repository for nng.
odseq
Outlier detection in multiple sequence alignment
optimotu
Optimize OTU clustering thresholds
optimotu.pipeline
R pipeline for environmental DNA barcoding
packrat
Packrat is a dependency management system for R
phylotax
Refine taxonomic assignments of environmental sequences using a phylogenetic tree
pifcosm
Pipeline for Construction of Supermatrices
protaxa
PROTAX for aligned sequences
r-drake-feedstock
A conda-smithy repository for r-drake.
r-fst-feedstock
A conda-smithy repository for r-fst.
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