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yiming-kang avatar yiming-kang commented on July 28, 2024

Thank you, Hugo! I really appreciate your feedback and suggestions. I'll be working on improving the user-friendliness over the next few weeks. The interplay between Docker and SLURM will take sometime to come live.

from netprophet_2.0.

yiming-kang avatar yiming-kang commented on July 28, 2024

@tavareshugo We have rolled out a SLURM-independent, MPI-free version, which can run in a serial fashion. The detailed instructions are in README.

Also, please be advised that the serial run may slightly lower the performance of estimating shrinkage parameters in LASSO regression, as it would calculate a local shrinkage for each genes as opposed to one global shrinkage for all genes.

from netprophet_2.0.

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