Comments (4)
does your bam file have chromosomes with the "chr" prefix?
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Please allow a quick sidetrack since this issue has the culprit in its title. I have just prepared the Debian package for hts-nim-tools and interpreted the .nimble build instructions on
hts-nim-tools/hts_nim_tools.nimble
Line 15 in f03225b
Is my interpretation correct?
from hts-nim-tools.
it does, but it's probably better to name it hts_nim_tools. I can change this if it simplifies things.
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Hm. I might want to come back to that but for the moment - let's see where this carries us. I just added a symlink so either variant is fine. And, while I have not yet completely thought this through, I would like to leave this as a simple vivid use case for Debian's interaction with bio.tools and SciCrunch - @joncison, @hmenanger, @matuskalas - can I drag you into this thread this way? Any opinion of yours?
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Related Issues (11)
- new tools: split vcf HOT 1
- could not import: sam_hdr_destroy HOT 9
- please tag new release - 0.2.0 is incompatible with nim 1.4
- Opening BAMs doesn't appear to return bool HOT 2
- example tools HOT 12
- bam_filter and count_reads broken by API update HOT 1
- bam-filter split bam file by groups of barcodes in single cell ATAC bam HOT 35
- Installation error HOT 2
- Could not import: bam_hdr_destroy HOT 6
- Question: Convert a seq[CigarElement] to Cigar HOT 3
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