brunograndephd Goto Github PK

2015-10-17-swc_python_workshop

Jupyter notebooks from SWC Python Workshop at SFU on 2015-10-17

2016-01-16_python_workshop

Jupyter Notebook from SWC Python Workshop taught at UBC on 2016-01-16

2016-02-02-sfu

2016-10-05-sfu

Programming with Python

2017-02-02-python_workshop

Code and data from Python workshop led on 2017-02-02

2017-02-02-sfu

2020-11-14-rladies-workshop

Tidying Up Messy Data: Hands-on Demos

advent-2022

aind-codeocean-api

Python wrapper around Code Ocean's REST API

authorlist

Simplify the task of maintaining a long author list and the corresponding affiliations

autoigv

This program can take a tab-delimited text file containing bam file paths and loci and create a subdirectory of image captures for you.

aws-genomics-workflows

Genomics Workflows on AWS

aws-infra

Global Sage Bionetworks AWS Infrastructure

bioconda-recipes

Conda recipes for the bioconda channel.

bioconda.github.io

Bioconda is a distribution of bioinformatics software realized as a channel for the versatile package manager Conda.

bioscripts

An agglomeration of scripts I wrote to help me handle, edit and generally deal with various bioinformatic tasks.

brunograndephd

cancer_api

A Python framework and API for handling and storing cancer genomics data and metadata.

cfn-cr-sc-product-provider

chromosomemappings

This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.

conda-packages

containers

copynumber

The "copynumber" R package with support for hg38

cwltool

Common Workflow Language reference implementation

data_curator

Data Ingest Shiny App

delly

DELLY2: Structural variant discovery by integrated paired-end and split-read analysis

dockstore-intro

Getting Started with Dockstore

dockstore-tool-calculate_driver_results

dockstore-tool-synapseclient

CWL interface to the Synapse command line.

dockstore-tool-template

A template project for setting up a containerized CWL Tool.