bsiranosian Goto Github PK

brown-compbio

Tools developed in computational biology courses at Brown

bsiranosian.github.io

dehancer

deep learning on enhancer and promoter motifs

epiwax

Epicuticular waxes, oh my!

gwspatialgenetics

The Institute of Disease Modeling interdisciplinary collaboration with Elizabeth Thiele (Vassar) and James Cotton (Wellcome Sanger Institute) to maximize the value of epidemiological and genetics data to understand Guinea worm transmission in Chad.

meta-cdiff

Analysis of metagenomic sequencing data

meta-mustache

modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

openmm-dna

Simulation of chromatin folding via loop extrusion and polymer condensation

pallid_pallas

Palindromes in mycobacteriophages

rocker-versioned2

Run current & prior versions of R using docker. rocker/r-ver, rocker/rstudio, rocker/shiny, rocker/tidyverse, and so on.

s3-for-google-apps-script

a binding for using AWS Simple Storage Service (S3) from Google Apps Script

sarek

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

scg_tools

Useful utilities for using the SCG cluster.

tango

Tango: alignment-free analysis of mycobacteriophage genomes

tango_final

Alignment-free analysis of mycobacteriophage genomes

vix_hedge

Analysis of using VIX and SPX options to hedge a portfolio