Comments (6)
how is it better to provide the infotamtion about what is required and provided by the component without breaking numpy convention? Should this info be included in the Notes section or in some new one?
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@belevtsoff It's not clear to me what exactly are you asking. What NumPy convention are you referring to?
from spikesort.
@cpcloud I'm referring to this numpy documentation convention. We agreed to use it in the project. Every component provides some data and may also depend on other components. This information has to be montioned in the docstring of course. I'm asking where is it better to put that information (in which section, among those proposed by the convention)
from spikesort.
Hmm, I still don't understand. What do you mean by "component" (class, function, variable, etc?) and "data" (e.g., does a function provide data? That question is vague, do you mean it returns an array; all objects in Python provide some data, that's where my confusion lies). Assuming you mean something like the former (returning an array), are you asking where the information about dependencies should be written and what the meaning of the returned array is? An example might help me understand exactly what you mean.
from spikesort.
Components I'm talking about are the building blocks of the spike sorting workflow. They are provided by the spike_beans high-level API so that the user can connect them together to create his own workflow. Already implemented components can be found in src/spike_beans/components.py
and an example setup in the examples/sorting/cluster_beans.py
.
Further info:
slides - there's some info about how the high-level API is arranged
data structures - the data I mentioned in the previous comment
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Cool, got it. Thanks!
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Related Issues (20)
- allow for more than 4 electrodes in spikewave plot
- cluster labels disappear after manual sorting and some other actions
- SpikeBrowser is unbrowsable when changed 'show_cells' property HOT 1
- jerky motions of the legend plot when moused over
- deprecated matplotlib function warning when manual sorting HOT 1
- ClusterAnalyzer.delete_cells() fails, if called before self.labels is requested HOT 3
- making FilterStack even more general HOT 2
- add `use_features` property to PlotFeatures HOT 4
- convert `FeatureExtractor.feature_methods` from `list` to `dict` HOT 3
- add SpikeSort to PyPI HOT 1
- Integrate with Travis CI HOT 3
- SpikeSort Coding sprint
- Support for optional components HOT 1
- SpikeBrowser: single-electrode data goes out of range while rescaling HOT 2
- overlapping feature names in feature_plot
- possible matplotlib memory leaks
- type consistency in spike_features datastructure
- signature is not preserved for fet* functions
- nxutils HOT 2
- Tutorial file not available HOT 3
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