bwang2014 Goto Github PK

admixr

an R package for admixture analyses

ancestral-alleles

Inference of Ancestral Alleles for genomic variants

bis-tools

A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clustering: alignWigToBed; )

bwang2014.github.io

My Personal Blog

circlize

circular layout in R

clinical-filter

filtering trio-based genetic variants in VCFs for clinical review

deletmutation

goodthinglist

GoodThingList 就是好物清单，使用文档见 Issues

hugeseq

For original Nature Biotechnology Publication (Q1 2012)

java-learning

kentutils

UCSC command line bioinformatic utilities

machine-learning-tutorials

machine learning and deep learning tutorials, articles and other resources

maize_v4_te_annotation

scripts and intermediate files used to annotate TEs in Jiao et al.

methylpy

methylpy is a whole genome bisulfite sequencing analysis pipeline. It is developed by Mattew D. Schultz.

msmc-tools

Tools and Utilities for msmc and msmc2

nanopolish

Signal-level algorithms for MinION data

nanopore-paper-analysis

Code for nanopore paper

ngsplot

Quick mining and visualization of NGS data by integrating genomic databases

ngstools

Programs to analyse NGS data for population genetics purposes

ngstools-1

Next-Generation Sequencing(NGS) toolkits.

plottree

provean-assembly-line

Find amino acid substitutions from SNPs and run PROVEAN to estimate functional severity

rna-sequencing

Repository containing all custom pipeline, perl scripts and R scripts used for RNA-sequencing data analyses

rnaseq-pip

RNAseq

seqtk

Toolkit for processing sequences in FASTA/Q formats

speedseq

A flexible framework for rapid genome analysis and interpretation

wangbao

Bao Wang

wes_vs_wgs