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Name: Daniel Caetano
Type: User
Company: Towson University + Universidade de São Paulo
Twitter: ds_caetano
Daniel Caetano's Projects
buddphy
R package for trait evolution under budding speciation.
corhmm
Fits a generalized form of the covarion model that allows different transition rate classes on different portions of a phylogeny by treating rate classes as “hidden” states in a Markov process.
corrseq
Method to study the evolution of sequence traits using phylogenies
dipsadidae_color_evolution
R code for the article "Have coral snake mimics diversified more than non-mimics?" Submitted to Evolution.
dissertation
Repository for my PhD dissertation at the University of Idaho
dtest_mcmc
R package to test correlation among discrete character using posterior predictive simulations.
geniculata_rates
Study of evolution of true bugs genitalia.
inkscape_layers_export
Short bash script to use InkScape to create powerpoint-like presentations.
posterior_phylo_sampler
Script to sample random trees from large nexus files with posterior distribution of trees.
ratematrix
Bayesian estimation of the evolutionary rate matrix.
samplesize
Testing the effects of sample size in estimates.
sfreemap
A Simulation Free approach for Stochastic Mapping
simulate_shape_phylo
R functions to simulate morphometric shape data in procrustes space on phylogenies.
test_git
Just a test.
workshop
Workshop about Markov chain Monte Carlo and phylogenetic comparative methods using R to be held at the University of São Paulo in February 2016. Course materials and tutorials are in Portuguese. Please message me if you are interested in the material in English.
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