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Daniel Caetano's Projects

buddphy icon buddphy

R package for trait evolution under budding speciation.

corhmm icon corhmm

Fits a generalized form of the covarion model that allows different transition rate classes on different portions of a phylogeny by treating rate classes as “hidden” states in a Markov process.

corrseq icon corrseq

Method to study the evolution of sequence traits using phylogenies

dissertation icon dissertation

Repository for my PhD dissertation at the University of Idaho

dtest_mcmc icon dtest_mcmc

R package to test correlation among discrete character using posterior predictive simulations.

ratematrix icon ratematrix

Bayesian estimation of the evolutionary rate matrix.

samplesize icon samplesize

Testing the effects of sample size in estimates.

sfreemap icon sfreemap

A Simulation Free approach for Stochastic Mapping

workshop icon workshop

Workshop about Markov chain Monte Carlo and phylogenetic comparative methods using R to be held at the University of São Paulo in February 2016. Course materials and tutorials are in Portuguese. Please message me if you are interested in the material in English.

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