Comments (2)
Hi, I apologize--I haven't updated the SAD tutorial to the new tensorflow 2 code and models. Right now, you're mixing a parameters file from tf2 with an older model from tf1. The scripts all work, so I'm happy to give you advice about how to use them. In the meantime, I'll prioritize updating that jupyter tutorial.
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I was able to get it working by using an older version of the repo and the files provided in the tutorial -- thank you!
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Related Issues (20)
- Blacklist file & unmappable regions HOT 2
- question about clip threshold in basenji/enformer. HOT 2
- Training with multiple directories HOT 1
- Problem with multigenome training with > 2 genomes HOT 1
- Tensorflow records generated with basenji_data.py differ from original HOT 1
- akita can't train HOT 1
- Question about Gene Expression Training Preprocessing HOT 3
- pygene installation HOT 2
- Question about Basenji2 receptive field HOT 2
- How to prepare TFRecords files for saluki training HOT 1
- error with akita_data. py HOT 3
- Output regions from Akita HOT 1
- Weird targets HOT 2
- distiller HOT 6
- No checkpoints found. HOT 1
- Problem with calculating the target based on the gene sequence HOT 1
- None in maps HOT 4
- .hic
- Expose 'raw' as an argument? HOT 2
- Black list HOT 6
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