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calinacopos.github.io

cell-morphodynamics

Design principles of single and two cell systems

ctdnascoring

Classified 1D signals/timeseries of DNA samples for cell-free tumor detection using supervised learning (logistic regression, gradient boosting regression, random forests) with feature engineering (PCA, autocorrelation, mean) and unsupervised (CNN).

emboworkshop2016

Numerical codes for EMBO Workshop 2016

gapythonfords

Online course (exploratory statistics for titanic dataset)

hybridmechanochempolarization

Implementation of stochastic dynamics that lead to a pattern formation (Application: Cell directionality for migration)

parallelized-cuda-method-of-regularized-stokeslets

pysindy

A package for the sparse identification of nonlinear dynamical systems from data

stressfibers

Code in support of "Stress fibers are embedded in a contractile cortical network" (Nature Materials, Vol. 20, 410-420)