callahantiff Goto Github PK

abra-collaboratory

git reproducible - version control your ideas

achilles

Automated Characterization of Health Information at Large-scale Longitudinal Evidence Systems (ACHILLES) - descriptive statistics about a OMOP CDM v4 database

bardiesel

biohackathon-projects-2021

For BioHackathon Europe 2021.

bioregistry

📮 An integrative registry of biological databases, ontologies, and nomenclatures.

callahantiff.github.io

Personal website development project

cayman

Cayman is a Jekyll theme for GitHub Pages

ccp-extension-ontology-1

An ontology of extension classes grounded in the OBOs

chords-qa

QA packages for CHORDS VDW

common

a library of utility code for a variety of "common" tasks

contributing

Guidelines for contributing to Esri open source projects

crossmeta

R code to process GEO gene expression data

data-science-interviews

Data science interview questions and answers

datasource

A library of code for parsing (mostly biomedical) data source files and converting their contents to RDF

emptystudyrepository

An empty repository, to be used as the template for new studies

gensim

Topic Modelling for Humans

ignorenet

identifying and annotating uninvestigated disease-associated genes

intro-to-nltk

Code and Notebooks for the Natural Language Processing with Python course.

kabob

KaBOB (Knowledge Base Of Biomedicine)

kabob-base.docker

Build files for a KaBOB Docker image

kabob.app

Install, build, and run a KaBOB instance via Docker

knowtator-2.0

A text annotation plugin for Protege 5+

kr

Clojure API for RDF and SPARQL - provides consistent access to APIs including Jena and Sesame

loftwah

My special repository

loinc2hpoannotation

loinc2hpo Annotation Data

manigandand

markdown_readme

Markdown - you can mark up titles, lists, tables, etc., in a much cleaner, readable and accurate way if you do it with HTML.

medium-doc2vec

This repository contains resources for the medium articles I have written.

ml-from-scratch

Machine Learning From Scratch. Bare bones NumPy implementations of machine learning models and algorithms with a focus on accessibility. Aims to cover everything from linear regression to deep learning.

mondo

Mondo ontology