canergen Goto Github PK
Name: Can Ergen
Type: User
Company: University of California Berkeley
Bio: Computational Biology PostDoc at UC Berkeley and Weizman Institute of Science Clinician Scientist at University Hamburg
Location: Berkeley
Can Ergen's Projects
bbknn
Batch balanced KNN
caching-decorator
Caching Decorator
celltypist
A tool for semi-automatic cell type classification
cmap2d
A small library for generating and sampling 2D RGB colormaps.
embedding-scvi
goatools
Python scripts to find enrichment of GO terms
milopy
Python implementation of Milo for differential abundance testing on KNN graph
onclass
Single cell typing based on cell ontology
openproblems
Formalizing and benchmarking open problems in single-cell genomics
openproblems-v2
Formalizing and benchmarking open problems in single-cell genomics
popv
scanorama
Panoramic stitching of heterogeneous single cell transcriptomic data
scvi-tools
Deep probabilistic analysis of single-cell omics data
scvi-tutorials
Notebooks used in scvi-tools tutorials
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