cao-ben Goto Github PK

a-deep-learning-model-for-predicting-next-generation-sequencing-depth-from-dna-sequence

A Deep Learning Model for Predicting Next-Generation Sequencing Depth from DNA Sequence

a-fast-transformer-based-general-purpose-losslesscompressor

This repository contains the source code and dataset link mentioned in WWW 2022 accepted paper "TRACE:A Fast Transformer-based General-Purpose LosslessCompressor".

antibioticsai

Supporting code for the paper "Discovery of a structural class of antibiotics with explainable deep learning"

bdrl

The source code of the paper "BDRL: Combining Bert and Deep Reinforcement Learning to learn the Combinatorial Optimization Algorithms over Graphs"

best-websites-a-programmer-should-visit

:link: Some useful websites for programmers.

biochem-err-dna

bleep

Spatially Resolved Gene Expression Prediction from H&E Histology Images via Bi-modal Contrastive Learning

chamaeleo

BGI DNA Storage Kit

charm

chemprop

Message Passing Neural Networks for Molecule Property Prediction

clash-for-linux

Linux 端使用 Clash 作为代理工具

clustered-nanopore-reads-dataset

A dataset of real DNA traces for benchmarking trace reconstruction algorithms

cnn-graph-classification

A convolutional neural network for graph classification in PyTorch

decagon

Graph convolutional neural network for multirelational link prediction

deepconsensus

DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) data.

deepdistilling

Mechanistically interpretable neurosymbolic AI (Nature Comput Sci 2024): losslessly compressing NNs to computer code and discovering new algorithms which generalize out-of-distribution and outperform human-designed algorithms

demo

for first

dna-fountain

DNA-Fountain

dna-hyb-deep-learning

Code accompanying the "Efficient approximation of DNA hybridisation using deep learning" paper

dna-nn

Model and predict short DNA sequence features with neural networks

dna-storage

dna-storage-transform

Single Read Reconstruction for DNA Data Storage Using Transformers (official implementation)

dna-synthetic-steganography-based-on-conditional-probability-adaptive-coding

dna2vec

dna2vec: Consistent vector representations of variable-length k-mers

dna_data_storage

This repo includes our work on transforming Text data to DNA nucleotide data.

dna_rs_coding

Error correction scheme for storing information on DNA using Reed Solomon codes

dnasimulator

DNA Simulator for Technion

doris

Code associated with DORIS: Dynamic DNA-based information storage. https://doi.org/10.1101/836429

dsi-qg

The official repository for "Bridging the Gap Between Indexing and Retrieval for Differentiable Search Index with Query Generation", Shengyao Zhuang, Houxing Ren, Linjun Shou, Jian Pei, Ming Gong, Guido Zuccon and Daxin Jiang.

erasure-coding-durability

Python code to calculate the durability of data stored with erasure coding, such as Reed-Solomon.