carol-kim Goto Github PK

acdcourse

Course Material on Analyzing Cohort Datasets in R.

buckley_lab_sip_project_protocols

Buckley lab protocols for conducting SIP studies

cc-etiquette

Using a coding etiquette to ensure code readability

cjm_supplement

Supplementary data for: Compositional analysis: a valid approach to analyze microbiome high throughput sequencing data

diversity_productivity

Microhabitats associate with bacterial biodiversity-ecosystem function relationships

final_pafl_trophicstate

This is the repository for the manuscript "Phylogenetic conservation of freshwater lake habitat preference varies between abundant bacterioplankton phyla" written by Marian L. Schmidt, Jeffrey D. White, and Vincent J. Denef.

hja-streams

masame

Code to run the shiny functions for the MASAME suite

microbiomeanalystr

A companion R package for the MicrobiomeAnalyst web server

phyloseq-extras

Scripts for doing stuff with phyloseq objects.

raup_crick

Fast version of raup_crick_abundance (Stegen et al. 2013)