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benchling-api-client

Python Client for the Benchling API

benchling2sbolv

Automatic Plotting of DNA Sequences from Benchling into SBOL Visual

corefsp

corner.py

Make some beautiful corner plots

danio5p

dnaplotlib

DNA plotting library for Python

flowcal

Python Flow Cytometry Calibration Library

genesis

Deep Exploration Networks - Diverse Deep Generative Models for DNA, RNA and Protein Sequences

isolearn

Automated loading and processing of genomics data for Deep Learning

lpa-design

lpa-program

Generate programs for a Light Plate Apparatus (LPA).

matrix-clustering_stand-alone

This is a stand-alone version of RSAT matrix-clustering. This version is faster and simplified compared to the original RSAT matrix-clustering but the graphical output is still under development.

paper-5utr-design

Code for "Optimizing 5’UTRs for mRNA-delivered gene editing using deep learning"

plate-design

Library to design cell culture experiments in plates with chemical inducers

pyswarm

Particle swarm optimization (PSO) that supports constraints

rbs-calculator-client

Python Client for the Salis RBS Calculator

scrambler

Interpretation by Deep Generative Masking for Biological Sequences

shap

A game theoretic approach to explain the output of any machine learning model.

tbarplot

tfmodisco-lite

A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.

tlc5941_library

A library for using the TLC5941 with Atmel microcontrollers.