cbp44

docker-copier

Alpine-based Docker container for securely running the copier template rendering software

docker-snakemake

Dockerfiles to create best practice containers for running and developing Snakemake workflows

docker_images

A collection of useful Docker images I created and pushed to Docker Hub

hadatac

HADatAc: Human-Aware Data Acquisition Framework

metaseqlite

A Python 3 compatible version of the major features of metaseq, a framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data

ontobio

python library for working with ontologies and ontology associations

rna-seq-star-deseq2

RNA-seq workflow using STAR and DESeq2

samflags

Command line utility written in NodeJS to decode SAM flags to explain what they mean.

snakemake

This is the development home of the workflow management system Snakemake. For general information, see

snakemake-workflow-ref_genomes

Snakemake workflow for downloading Ensembl reference genomes for use in downstream bioinformatics analyses

snakemake-workflow-rna-seq

Snakemake workflow for performing an RNA-seq analysis

snakemake-workflow-template

A cookiecutter template for a snakemake-workflow readme file

snakemake-wrappers

This is the development home of the Snakemake wrapper repository, see

ublock-origin-rules

Rules for uBlock Origin to make commonly used websites work in medium, hard and nightmare modes

whyis

Whyis is a nano-scale knowledge graph publishing, management, and analysis framework.