Christian Brueffer's Projects
BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy visualization of commonly used DNA-seq capture based methods.
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
Website for #BCC2020
A powerful toolset for genome arithmetic.
Utilities for building and managing bioconda recipes
Fork of the official biopython repository.
Source of biopython.org website, migrated from MediaWiki
An ultrafast memory-efficient short read aligner
A fast and sensitive gapped read aligner
SV detection from paired end reads mapping
cbrueffer Github README
Personal website.
Miscellaneous collection of Python and R scripts for processing Iso-Seq data
CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria
Circular visualization in R
CloudBioLinux: configure virtual (or real) machines with tools for biological analyses
classification of higher-order structural variants from breakpoint data
A conda-smithy repository for conda-forge-pinning.
Cleaning up Conda r-packages
OPNsense GUI, API and systems backend
Slides, figures, and other material for teaching using tracing and observability on FreeBSD
A collaborative review of the emerging literature on diagnostics and treatments related to COVID-19
CrossMap is a python program to lift over genome coordinates from one genome version to another.
A collaboratively written review paper on deep learning, genomics, and precision medicine
OPNsense documentation
don't get DUP'ed or DEL'ed by your putative SVs.
React
Typescript
Django
Laravel
Facebook
Microsoft
Google
Alibaba
D3
Tencent