Name: Computational Methods for Comparative Genomics at Simon Fraser University
Type: User
Company: Simon Fraser University
Bio: Professor in Mathematics,
Researcher in Computational Comparative Genomics
Location: British Columbia, Canada
Blog: https://cchauve.github.io/
Computational Methods for Comparative Genomics at Simon Fraser University's Projects
See https://github.com/nluhmann/AGapEs for new versions.
Reconstruction of ancestral genome maps
ARETE_PLASMIDS_PAPER
Material for the Bielefeld Applied Comparative Genomics block seminar course September 2019 - February 2020
Interactive fish trap modelling
Jupyter notebook to explore the design of geometric patterns of Coast Salish woven baskets
Lab website
Ecoding phylogenetic trees as vectors
Common Intervals Global ALigner
Hybrid correction of PacBio long reads using a shortest path / one-end anchors approach. Developed at the SFU CompBio lab: https://github.com/sfu-compbio/colormap
Evolutionary scenarios for gene adjacencies in a Gibbs-Boltzmann framework
Counting Duplication/Loss/Transfer Histories
Code and results for computing the number of evolutionary histories for gene families
Fast Phylogentic Scaffolding of Ancient Contigs
Hybrid Assembler for Plasmids
Repo to store large documents to share
An open-source pipeline for benchmarking DNA long read correction algorithms for third generation sequencing technology
MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies
Yersinia pestis and Insertion Sequences
See https://github.com/nluhmann/PhySca for new versions.