ceciliadeng Goto Github PK

assembly-methods-nanopore

Assembly methods for nanopore-based metagenomic sequencing: a comparative study

assemblyqc

A NextFlow pipeline for evaluating assembly quality

awesome-pangenomes

A list of software for pangenomics

bbs_meeting_2015

Programme, notes, slides etc. related to BBS meeting prior to MapNet2015

crisp

Code for multi-sample variant calling from sequence data of pooled or unpooled DNA samples

degust

An interactive web-tool for RNA-seq analysis

eelseeds

Scripts used to extract seeds for the European eel genome assembly

elconcatenero

gbs-pipelines

Docker images for sequencing.

gbs_moa

Workflow for GBS in moa template format

genome-assembly-workshop

high-quality-genomes

This repository aims to hosting workflows/codes that have been developed for GA high-quality-genome projects.

jcvi

Python utility libraries on genome assembly, annotation and comparative genomics

mapnetnz.github.io

MAPNet website

mapping_pipeline

Mapping pipeline for data generated using Arima-HiC

mathiomica

MathIOmica is a Mathematica package for omics data analyses

moduledetection-evaluation

networktutorials

Repository for presentations and network inference tutorials

perl

proc10xg

processing 10x genomics reads

r

sandpit

A demonstration repository

tomahawk

Fast calculations of linkage-disequilibrium in large-scale human cohorts

tulip

TULIP - The Uncorrected Long read Itegration Pipeline

ucd-biocore-galaxy

vcf_plotkit

Filter & Plot features in VCF files