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2024-csv-lab-overview-poster

Genomics on the frontline of infectious disease outbreak response and animal health emergency investigations at the Canadian Food Inspection Agency

delta-sars-cov-2-wtd-qc

Quebec white-tailed deer SARS-CoV-2 code, Jupyter Notebooks and analysis data and results

gfflu

Python CLI app to generate annotations of Influenza A virus (IAV) gene segment nucleotide sequences with BLASTX and Miniprot

miso-tool

Parse the samples and sequencing runs info from MISO Pinery JSON files and generate Nextflow samplesheets and other files

miso_nanopore_runscanner

A MISO LIMS Nanopore Run Scanner with pod5 and flowcell re-use support

nf-flu

Influenza genome analysis Nextflow workflow

nf-ionampliseq

nf-test-datasets

Nextflow workflow test datasets for CI

nf-villumina

Generic viral Illumina sequence analysis pipeline

nf-virontus

Oxford Nanopore reference mapping, taxonomic classification, de novo assembly workflow primarily for viral sequence data

scovtree

shiptv

Standalone HTML interactive phylogenetic tree visualization powered by Phylocanvas and Javascript

wgscovplot

The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth information, variants and DNA Gene features

xlavir