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barcodecgi

Code to generate barcodes and QR codes for printing

barcodeswe

Barcode database creation

bearlabid

Lab and SEP Id 2019

bjorn2019

This repo is a map showing the analysis status for bear monitoring in Sweden 2019

bjorn2020

bjorn2021

Map showing map of progress for the scat bear monitoring at NRM

bjorn2022

cgi-nrm-lista

lista med använda CGI-NRM nummer

cgi-nrm.github.io

Center for genetic identification

cgibashscripts

A repository for storing bash scripts of common use at CGI.

dada2

Accurate sample inference from amplicon data with single nucleotide resolution

edna

eDNA analysis

edna-literature

Examples of eDNA studies

edna_reference

Curated reference sequence data for eDNA work

esbase-new-shiny

The shiny app of the new Esbase system

esbaser

Contains the functionality for the new esbase system. This is planned to be used by the esbase-new-shiny application.

example-rmd-templates

A selection of minimal templates used to highlight R Markdown templates, as referred to in the "R Markdown Definitive Guide"

fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting...)

fiskagg

Kod för att artbestämma DNA sekvens från fiskägg

fiskvasterbotten

eDNA fisk

fjallrav_prover

prover i MPB

genomeanalysis

Analysis of genome data at CGI

genotypecheck

Tools for systematically evaluate and match genotype data

gps-convert

Convert GPS coordinates

kanban-docker

this is a kanban-board from kanban.org (https://docs.kanboard.org)

maparctic

Example of shiny apps showing the mountain region of Sweden

ngsgenotype

nmo-combineharbourporpoisedataforsmhi

primers

Primers available at CGI

qiime2

Official repository for the QIIME 2 framework.