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ab-bind-database

Antibody Binding Mutational Database

ablang

AbLang: A language model for antibodies

algorithm_interview_notes-chinese

2018/2019/校招/春招/秋招/自然语言处理(NLP)/深度学习(Deep Learning)/机器学习(Machine Learning)/C/C++/Python/面试笔记，此外，还包括创建者看到的所有机器学习/深度学习面经中的问题。 除了其中 DL/ML 相关的，其他与算法岗相关的计算机知识也会记录。 但是不会包括如前端/测试/JAVA/Android等岗位中有关的问题。

alphaseq_antibody_dataset

Dataset with quantitative binding scores of scFv-format antibodies against SARS-CoV-2 target peptide

antibody_benchmark

Antibody-Antigen Docking and Affinity Benchmark

aptanet

AptaNet as a Deep Learning approach for Aptamer-Protein Interaction Prediction

biopython-notebook

Notebooks to introduce biopython

cfcloud

cfCloud: A Cloud-based Workflow for Cell-Free DNA Data Analysis

cfdna_deconv_benchmark

cfdnamethy

Disease Prediction by Cell-Free DNA Methylation

cfmethyl-seq

cfMethyl-Seq code

ddcfdna

project on analyzing donor-derived cell-free DNA data of transplant patients

deepgs

DeepGS: Deep Representation Learning of Graphs and Sequences for Drug-Target Binding Affinity Prediction (ECAI 2020)

dgraphdta

a novel DTA predition method using graph neural network

epi_epmp_pytorch

Pytorch Implementation of Epi-EPMP multitask model

epitopemappingpredictor

gat-go

huggingface_toturials

bert-base-chinese example

igfold

Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies

iglm

Generative Language Modeling for Antibody Design

ml-nlp

此项目是机器学习(Machine Learning)、深度学习(Deep Learning)、NLP面试中常考到的知识点和代码实现，也是作为一个算法工程师必会的理论基础知识。

moltrans

MolTrans: Molecular Interaction Transformer for Drug Target Interaction Prediction (Bioinformatics)

network-learning

learning neural-network

pegasus-demo

This is a working demo of the pegasus summarization model trained on cnn_dailymail

refinegnn

surge_forecast_extratrees

Surge Forecast using ExtraTreesRegressor. I'm doing time series forecasting without actually having to do time series analysis, it works better than I had hoped.

tankbind

Open source code for TankBind. Galixir Tenchnologies

vae

a simple vae and cvae from keras