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awesome-pipeline

A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

dcm_heart_cell_atlas

Single cell atlas of the hearts of patients with dilated cardiomyopathy

grein

GREIN : GEO RNA-seq Experiments Interactive Navigator

integrative-transcriptomics

Integrative transcriptomics reveals sexually dimorphic control of the cholinergic/neurokine interface in schizophrenia and bipolar disorder

intro-to-rnaseq-hpc-o2

This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster

machine-learning-collection

A resource for learning about ML, DL, PyTorch and TensorFlow. Feedback always appreciated :)

mathematical-modeling

matlab

《数学建模算法与应用》司守奎matlab程序

melbioinf_docs

Melbourne Bioinformatics documentation in markdown format

rna

scrna-seq_online

scrna.seq.course

Analysis of single cell RNA-seq data course

seurat

R toolkit for single cell genomics

snakemake-workshop

tensorflow2-generative-models

Implementations of a number of generative models in Tensorflow 2. GAN, VAE, Seq2Seq, VAEGAN, GAIA, Spectrogram Inversion. Everything is self contained in a jupyter notebook for easy export to colab.

tinyatlas

A tiny cell atlas for commonly sequenced organisms.

tutorials

This repo contains tutorials for different NGS analysis methods

univcambridge_scrnaseqintro_base

wdldoc

Create WDL documentation using Markdown.

zumis

zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs