chapmanb Goto Github PK
Name: Brad Chapman
Type: User
Company: Ginkgo Bioworks
Bio: Biologist and programmer
Twitter: chapmanb
Location: Boston, MA
Blog: http://bcb.io
Name: Brad Chapman
Type: User
Company: Ginkgo Bioworks
Bio: Biologist and programmer
Twitter: chapmanb
Location: Boston, MA
Blog: http://bcb.io
An open source platform for managing and analyzing biomedical big data
A conda-smithy repository for bazel.
Incubator for useful bioinformatics code, primarily in Python and R
Deprecated conda recipes for bcbio python code and dependencies -- migrated to bioconda
Experiment: Clojure interface to ADAM distributed file formats for variants and aligned reads
Investigate coverage metrics for variant calling experiments
Next-generation sequencing analysis pipelines built on Hadoop and Cascalog
Prioritize small variants, structural variants and coverage based on biological inputs
Idempotent, transactional runs of external command line programs
Toolkit to analyze genomic variation data, built on the GATK with Clojure
Extended functionality for analyzing genomic variability, built on bcbio.variation and GATK
Website for #BCC2020
Clojure API for Ensembl data access via JEnsembl
A python library for interacting with CloudMan and Galaxy API
Conda recipes for the bioconda channel.
Brad's fork of main repository
Smart VCF parser
BioSQL web
Declarative data visualization in Clojure(Script).
Changepoint Analysis of Genomic Reads
Battenberg algorithm and associated implementation script
This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.
Multimolecular NA Design tool with support for extensible sequence constraints
Clojure library for interacting with Galaxy, CloudMan, and BioCloudCentral, built on blend4j
Genome Connector: Clojure API to access multiple genomic resources
Access GenomeSpace data integration platform with simple Clojure API
ClojureScript interface to Harvest's Chosen <select> library
CloudBioLinux: configure virtual (or real) machines with tools for biological analyses
Copy number variant detection from targeted DNA sequencing
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.