chemhack / libsbgn.js Goto Github PK
View Code? Open in Web Editor NEWA bio network format library
A bio network format library
To get started, you need to checkout the repository: git clone git://github.com/chemhack/libSBGN.js.git cd libSBGN.js This will pull in the google closure library and compiler: git submodule init git submodule update Run 'ant compile' to compile all js files into one, then you can access html/dummy_compiled.html
should be 'statevariable' : ['exist']
but we should check that and introduce an api for state variable positions
we will soon introduce a new api for points on edges
'points' : [ {x: 100, y: 100}, ...]
but also the order of the points on the edge is not in the right order when converting from SBGN-ML to jSBGN
see the SBGN-ML test in the biographer editor (will push a working version soon)
we have discussed this and came to the conclusion that node positions of elements in compartments should be realtive to its parent.
this has to be changed in the current implementation
tags can be rotated with the orientation flag in jSBGN, this should be added
Hi,
'ant compile' only got me an unreadable, compressed version of libSBGN.js.
Is it possible to build a human readable version ?
Matthias
points on the edges are lost, also jsbgn now has a stable new api for points see http://code.google.com/p/biographer/wiki/graph_exchange
when importing some of the reactome models I realized that the order of the objects in jsbgn hides some compartments that should be subcompartments of another compartment
jsbgn now supports clonmarker flags
see http://code.google.com/p/biographer/wiki/graph_exchange
would be nice if we could also import biopax
can you create a propertie for the sbgn language and set in the importers and exporters
for jsbgn it should look like this
{ sbgnlang : 'PD' , nodes : [ ...
http://code.google.com/p/biographer/wiki/graph_exchange?ts=1357305600&updated=graph_exchange
in jSBGN submap is not supported properly so for now the inner objectes should be tags
A declarative, efficient, and flexible JavaScript library for building user interfaces.
๐ Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. ๐๐๐
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google โค๏ธ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.