chemhack / libsbgn.js Goto Github PK

should be 'statevariable' : ['exist']
but we should check that and introduce an api for state variable positions

we will soon introduce a new api for points on edges
'points' : [ {x: 100, y: 100}, ...]

but also the order of the points on the edge is not in the right order when converting from SBGN-ML to jSBGN

see the SBGN-ML test in the biographer editor (will push a working version soon)

we have discussed this and came to the conclusion that node positions of elements in compartments should be realtive to its parent.
this has to be changed in the current implementation

tags can be rotated with the orientation flag in jSBGN, this should be added

Hi,

'ant compile' only got me an unreadable, compressed version of libSBGN.js.
Is it possible to build a human readable version ?

Matthias

points on the edges are lost, also jsbgn now has a stable new api for points see http://code.google.com/p/biographer/wiki/graph_exchange

when importing some of the reactome models I realized that the order of the objects in jsbgn hides some compartments that should be subcompartments of another compartment

jsbgn now supports clonmarker flags
see http://code.google.com/p/biographer/wiki/graph_exchange

would be nice if we could also import biopax

can you create a propertie for the sbgn language and set in the importers and exporters
for jsbgn it should look like this
{ sbgnlang : 'PD' , nodes : [ ...

http://code.google.com/p/biographer/wiki/graph_exchange?ts=1357305600&updated=graph_exchange

in jSBGN submap is not supported properly so for now the inner objectes should be tags