Comments (1)
Pretty sure the the 2nd error "DisplacementMagnitudePenalty(index 3) - This component is not installed!" is due to the initial build of Elastix -- either it lacks that specific file or the file directory is permanently pointed toward a directory on Christoph's machine.
Either way, I decided to install Elastix using CMake on my linux machine and that works well. This can be done by first installing ITK
`module load git/2.35.3 gcc/6.2.0 cmake/3.22.2 #this loads various libraries in my institution's high performance computing cluster.
cd /path/to/my/folder/
mkdir itk
cd itk
git clone https://github.com/InsightSoftwareConsortium/ITK
mkdir build
cd build
cmake ../ITK/ #took 2 min.
make -j4 #took 1.5 hours
#Install Elastix!
module load git/2.35.3 gcc/6.2.0 cmake/3.22.2
cd /path/to/my/folder/
git clone https://github.com/SuperElastix/elastix.git
cd elastix
mkdir build
cd build
cmake .. -DITK_DIR=/path/to/my/folder/itk/build/
make install`
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Related Issues (20)
- GUI: Alignment Issue HOT 4
- Export ID numbers for ClearMap2.1? HOT 1
- Numpy import issues with `ClearMap.compile` HOT 1
- Example dataset for CellMap and TubeMap HOT 5
- cannot compile ClearMap modules HOT 8
- .sh install meet some error HOT 7
- conda error while installation HOT 5
- Some problems about Mapping the Fine-Scale Organization and Plasticity of the Brain Vasculature HOT 1
- matplot not available from current channel found while installation HOT 1
- Wobbly Stitcher crashing HOT 4
- Inverse transformation to transform brain images onto atlas space HOT 1
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- Skipping Atlas Registration in TubeMap
- Elastix Error During Registration
- missing ClearMap.Alignment.orientation module in branch vasculature_analysis HOT 2
- modular implementations?
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