Comments (2)
ddooley
commented on July 18, 2024
I believe Emma communicated that GISAID format currently doesn't have any export formats set up for it, or an SOP, hence the experience you encountered there. I'll close this unless I hear there is some action to extend GISAID that way.
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griffie
commented on July 18, 2024
Hi Ibtisam, thanks for trying out the DH! It's true, the GISAID template currently doesn't transform to any other template and is more of an endpoint.
The other templates (PHA4GE, international MPXV) can transform TO the GISAID template but not vice versa.
If you are looking for scripts to transform GISAID records into other formats such as ENA/NCBI, you can try multiSub and also the GISAID-to-ENA script that ENA offers.
If you need more info, let me know.
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Related Issues (20)
- MPX international export: Remove NML_LIMS from the export options list HOT 1
- MPX international template: adjust order of NCBI Biosample export field output HOT 2
- absence of a export.js in a template folder -> Unable to load template at path .... Path should consist of [template folder name]/[template name]... HOT 4
- DH functions still referencing old template format HOT 1
- Add method for getting data as array of objects HOT 3
- Canadian MPX template: Change position of SUBMITTED_RESLT fields in NML-LIMS export output HOT 1
- Website localization HOT 7
- could more than the one leftmost column be frozen from scrolling? HOT 2
- Canadian MPX template: change order of fields in NML export output HOT 1
- Feature request: Hidden slots & values when exporting HOT 1
- rethink is_a dh_interface requirement for including class in menu system? HOT 4
- new issues about horizontal scrolling in DH, as embedded in NMDC portal HOT 1
- Allow `getDataObjects` to export invalid data HOT 1
- Add method for loading data as array of objects
- "Jump To..." stops working after switching templates
- DH export tab popping error HOT 8
- DataHarmonizer should honor LinkML unique_key assertions, for multiple columns with uniqueness constraint HOT 3
- DataHarmonizer should honor at least a subset of the LinkML rule language HOT 5
- Does DH provide a way of storing attributes of a row/object but never displaying them? HOT 3
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