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How do define genome about wigglescout HOT 2 CLOSED

cnluzon avatar cnluzon commented on June 25, 2024
How do define genome

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cnluzon avatar cnluzon commented on June 25, 2024

Thanks for the feedback! The only functions thatuse the genome as parameter are the bins functions (bw_bins, plot_bw_bins_*), since they need to know the chromosomes and lengths, but this information is pulled via Seqinfo from the GenomeInfoDb package so in reality, anything supported by the package works. I had not documented this before because we use it for mainly those genomes, so I did not have bigWigs from other genomes, but it should work for other genomes too, like "dm3" or "GRCh38". At least, I checked that build_bins function works, so let me know if bw_bins does not work for your files. See the Seqinfo documentation for more examples: https://www.rdocumentation.org/packages/GenomeInfoDb/versions/1.8.3/topics/seqinfo

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