cobralab Goto Github PK

admin

Repo for tracking admin issues

antsregistration-maget

A reimplementation of MAGeTbrain using only ANTs tools.

atlases

Segmentations of Neuroanatomy on Hi-Res T1 and T2 MRIs and publicly available population averages in MNI space

awol-mrf

Label-Fusion Method for MR image data

bsc

MRI biomarker, boundary sharpness coefficient (BSC).

cobra-nmf

Collection of scripts for formatting vertex and/or voxel data into matrix format

cobralab.github.io

Website

cortical_markers_paper

All code used to generate the results seen in the manuscript ____

depreciated_mincbeast_bpipe

design-choices-cca-neuroimaging

documentation

Documentation for every thing, everything documented

fmri_phantom_analysis

hitchhikersguidetoneuroimaging

The Hitchhiker's Guide To Neuroimaging - All the things HOWTOs don't tell you

iterativen3

iterativen4_multispectral

A pipeline which performs iterative classification and bias field correction of T1-weighted MRIs

lpba40-local-civet-measures

Computes mean cortical thickness and total surface area from CIVET outputs using LPBA40 atlas

lsn

Longitudinal Siamese Network for clinical trajectory prediction

magetbrain

Multiple Automatically Generated Templates brain segmentation algorithm

magetbrain-nextflow

magetdocker

Repository with Docker Build for MAGeTBrain

minc-bpipe-library

Library of bpipe implemented commands commonly applied to minc datafiles, suitable for importing into other pipelines

minc-toolkit-extras

Extra miscellaneous scripts for minc-toolkit

minc-vm

Packer built VMs with minc-toolkit and friends

mousephgymetrics

Extracts various instantaneous metrics from the raw respiration and pulse oximetry traces

mtr_processing

optimized_antsmultivariatetemplateconstruction

A re-implementation of antsMultivariateTemplateConstruction2.sh using optimized image pyramid scale-space and qbatch support

predict-decline

Dimensionality reduction of vertex-wise CT measures to predict cognitive decline trajectories.

pub-mrf

Markov Random Fields model for label fusion in automated MRI segmentation pipelines.

pyqc

Python+Qt5 Interface for quickly quality-controlling arbitrary sets of images

qbatch