Related Issues (20)
- SMBE workshop tasks
- installed does not show homology data installation
- alignments should use a directory data store
- alignments command should accept file of genomic coordinates
- MAF files contain duplicated alignment blocks HOT 1
- establish whether duckdb is a viable replacement to sqlite
- ENH: ability to get summary statistics for Ensembl hosted genomes
- download.cfg paths should be relative HOT 1
- ENH: make download experience more robust
- create a docker container for installing EnsemblLite HOT 2
- add option to just get homology info to compara section HOT 1
- DOC: create docs for users
- Initial release on pypi
- investigate process for GitHub action based PyPI releases HOT 3
- install fails on some systems HOT 1
- Restarting install triggers SQL error HOT 1
- Usage on memory limited hardware HOT 2
- download issue HOT 2
- Exporting homolog groups issue HOT 2
- when num CPU is 1, don't use multiprocess
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