GithubHelp home page GithubHelp logo

Hi there

  • šŸ”­ Iā€™m currently actively working on Sequana and also maintaining BioServices, Damona, Fitter, colormap, spectrum, Bioconvert and easydev.
  • I'm currently leading the bioinformatics and data management activities of the Biomics NGS platform (biomics.pasteur.fr) building pipelines and tools for production.
  • šŸ‘Æ Iā€™m looking to collaborate on BioConvert, BioServices and Damona and of course Sequana. Would you be interested to take the lead on Spectrum, fitter, colormap, please let me know.

Thomas Cokelaer's Projects

attic icon attic

Bunch of tools for book-keeping

bioconvert icon bioconvert

Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.

colormap icon colormap

Utilities to visualise and create matplotlib colormaps and various color codecs

coverage icon coverage

Snakemake pipeline wrapping sequana_coverage to analyse several samples at the same time

damona icon damona

singularity environment manager (application to NGS and bioinformatics)

denovo icon denovo

Denovo Assembly from FASTQ files

depletion icon depletion

Deplete Fastq files from human or other content

easydev icon easydev

Common utilities to ease the development of Python packages

fastqc icon fastqc

sequana pipeline to perform parallel fastqc and summarize results with multiqc plot

fi.gdsc.anova icon fi.gdsc.anova

Scripts and R functions used to perform Analysis of Variance on the GDSC1000 data, thus to identify statistical interactions between genomic features and drug response, and produce formatted results and figures

gdsctools icon gdsctools

Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )

graphviz4all icon graphviz4all

dot and other graphviz executable in a simple singularity container

laa icon laa

Pacbio amplicon, sequana, phylogeny, variant

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    šŸ–– Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. šŸ“ŠšŸ“ˆšŸŽ‰

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google ā¤ļø Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.