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2017_plasmid_prediction_review

Contains code that is part of the plasmid prediction review (2017)

atlas

:earth_americas: ATLAS - workflows for assembly, annotation, and genomic binning of metagenomic and metatranscriptomic data.

bernstein-2016-productivity-and-diversity

Paper in preparation

bioconda-recipes

Conda recipes for the bioconda channel.

colinbrislawn.github.io

A small website

conda-forge-pinning-feedstock

A conda-smithy repository for conda-forge-pinning.

conda-recipes

conda recipes for bioinformatic tools like blast+, infernal, etc.

docs

Source repository for https://docs.qiime2.org

docs.qiime2.org

https://docs.qiime2.org live site

fastspar

Rapid and scalable correlation estimation for compositional data

gigabase-gigabyte

hundo

:bar_chart: Snakemake-based amplicon processing protocol for 16S and ITS sequences.

interesting-blaseball-games

A Python command line utility for exploring blaseball games. https://pypi.org/project/interesting-blaseball-games/

memdocs

Enable Public Contributions

mgm-26-grand-challenge

:seedling: :microscope: Helper code for JGI IMG demo project

microsoft-365-docs

This repo is used to host the source for the Microsoft 365 documentation on https://docs.microsoft.com.

mock-sequences

Mock community sequenced in three separate sequencing runs (MiSeq fastq files)

mykeys

pelican-bootstrap3

Bootstrap 3 theme for Pelican

pelican-themes

Themes for pelican

phyloseq

phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:

picante

R tools for integrating phylogenies and ecology

picrust

Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tests

q2-composition

q2-forums

q2-types

q2-vsearch

vsearch plugin for QIIME 2

qiime

Quantitative Insights Into Microbial Ecology (QIIME): Official repository for software and unit tests

qiita

Qiita - A QIIME databasing effort

r-git2r-feedstock

A conda-smithy repository for r-git2r.