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Colin Brislawn's Projects

atlas icon atlas

:earth_americas: ATLAS - workflows for assembly, annotation, and genomic binning of metagenomic and metatranscriptomic data.

conda-recipes icon conda-recipes

conda recipes for bioinformatic tools like blast+, infernal, etc.

docs icon docs

Source repository for

fastspar icon fastspar

Rapid and scalable correlation estimation for compositional data

hundo icon hundo

:bar_chart: Snakemake-based amplicon processing protocol for 16S and ITS sequences.

microsoft-365-docs icon microsoft-365-docs

This repo is used to host the source for the Microsoft 365 documentation on

mock-sequences icon mock-sequences

Mock community sequenced in three separate sequencing runs (MiSeq fastq files)

phyloseq icon phyloseq

phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:

picante icon picante

R tools for integrating phylogenies and ecology

picrust icon picrust

Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tests

qiime icon qiime

Quantitative Insights Into Microbial Ecology (QIIME): Official repository for software and unit tests

qiita icon qiita

Qiita - A QIIME databasing effort

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