combat-tb Goto Github PK
Name: combatTB
Type: Organization
Bio: Comprehensive Bacterial Analytical ToolKit for Tuberculosis (TB) Research (and related projects)
Location: RSA
Blog: https://combattb.org/
Name: combatTB
Type: Organization
Bio: Comprehensive Bacterial Analytical ToolKit for Tuberculosis (TB) Research (and related projects)
Location: RSA
Blog: https://combattb.org/
Backup of Galaxy Pipelines
:whale: combatTB Neo4j Database
COMBAT-TB Website
Utilities modules for COMBAT TB project tools
COMBAT-TB model is a Chado inspired graph model for genome annotation.
Contamination Filter
COMBAT-TB Explorer Web Application
Canada’s Integrated Rapid Infectious Disease Analysis Platform for Genomic Epidemiology
:whale: Deploying IRIDA and Galaxy all in one server/VM using Docker or Terraform
Galaxy pipelines as plugin for IRIDA intergration
Build an IRIDA plugin
IRIDA pipeline to build phylogeny from M. tuberculosis WGS samples
M. tuberculosis Variant and Drug Resistance Analysis
Ansible playbooks for Galaxy servers used during Masters in Bioinformatics
:whale: Neo4j Galaxy IE
Public Health England SNP calling pipeline.
The Refinery Platform is a data management, analysis and visualization system for bioinformatics and computational biology applications. The platforms consists of three major components: a data repository with rich metadata capabilities, a workflow engine based on the popular Galaxy system, and visualization tools to support the exploration and interpretation of results at all stages of the analysis process.
A tool to aggregate and load TB data to Neo4j
Galaxy wrapper for Jody Phelan's TB-Profiler
A tool for filtering VCF files (relative to M. tuberculosis H37Rv)
Generate an interactive HTML-based report from M.tb SnpEff annotated VCF(s)
A tool to import SnpEff annotated files to a Neo4j Graph database
Parses variant report from SNVPhyl and generates annotated (ala. SnpEff) VCF files, using COMBAT-TB eXplorer database for annotation
Custom command line utility tools to manipulate vcf files
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
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Some thing interesting about visualization, use data art
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We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.