combogenomics Goto Github PK

bbh

A script for running bidirectional best orthologs identification method

beamertheme

contiguator

Bacterial genomes finishing tool for structural insights on draft genomes

contiguator-webapp

CONTIGuator web server

deunifier

ductape

Analyze and link genomics and phenomics experiments

ductape_data

Reproducible analysis on the genome/phenome of four bacterial datasets

ductape_vs_opm

A reproducible comparison between the opm package and the DuctApe suite.

medusa

A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.

medusa-webapp

Medusa web server

medusa2

medusa2

medusa2-webapp

Medusa2 web server

medusa_datasets

A series of benchmarks for the Medusa scaffolder https://github.com/combogenomics/medusa

mestudio

A computational tool for extracting and analyzing methylation features from SMRT reads

metrob015

Raw data and code related to the manuscript "Metabolic robustness to growth temperature of cold adapted bacterium"

microbialloop

Codes for the modelling of P. tricornutum and P. haloplanktis co-culture

phtac125_metabolic_reconstruction

Metabolic reconstruction and modelling for the Antarctic bacterium Pseudoalteromonas haloplanktis TAC125

regtools

Scripts and libraries to perform motif searches inside genomes

rhizoreg

Data for the analysis on the Sinothizobium meliloti regulatory network

scripts_for_the_people

Commonly used scripts for basic computational biology tasks

snippets

Various snippets or random scripts

squid

syntheticmicrobialloop

tarseeker

Recursive seeker for tar archives. It supports bz2 and gzip compression formats.