Comments (2)
Actually, control group setting seems to be ignored. Calculated values for fold change and the column labels are correct though.
from structtoolbox.
this has now been fixed
from structtoolbox.
Related Issues (20)
- mean of medians not working correctly
- pqn factor_name has no description HOT 1
- fold_change output params have no column names
- RSD filter incorrectly states it removes feature below the threshold HOT 1
- add details of pqn calculation to description HOT 2
- report number of features used to compute the median for PQN HOT 2
- add option to use 'equal variance' in ttest HOT 1
- add selectivity ratio as an output for PLS objects
- add PLS scores plot for regression models HOT 1
- ask user to install missing packages when object is created
- PLS model is reporting coefficients for the last component only HOT 1
- report reasons for NA in ANOVA / ttest
- provide documentation for struct object outputs HOT 1
- the alpha parameter for fold change isnt used HOT 1
- the threshold for fold change using "median" isnt applied correctly HOT 1
- add "mean" method for calculating fold change HOT 1
- HSD parameter "unbalanced" never gets used
- Possibilities to plot 3d PCA ? HOT 1
- [BUG] default predicted slot for tSNE is set to a slot that doesnt exist
- Error occurs when plotting PLS feature importance HOT 2
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from structtoolbox.