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alien-libbigwig

Alien build script for libBigWig

bio-db-hts

Git repo for Bio::DB::HTS module on CPAN, providing Perl links into HTSlib

bpipe

cfncluster-cookbook

The Chef cookbook used to build and bootstrap CfnCluster

cfseq

CFseq pipeline

clinvar

This repo provides tools to convert ClinVar data into a tab-delimited flat file, and also provides that resulting tab-delimited flat file.

cyvcf

A fast Python library for VCF files leveraging Cython for speed.

denovogear

A program to detect denovo-variants using next-generation sequencing data. (http://www.nature.com/nmeth/journal/v10/n10/full/nmeth.2611.html)

genoverse

HTML5 scrollable genome browser

maxentscan

Maxentscan: Splice site scoring http://genes.mit.edu/burgelab/maxent/Xmaxentscan_scoreseq.html

ncov2019-artic-nf

A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019

openlava-drmaa

DRMAA library for Openlava

openlava-python

Python bindings for openlava

panogram

perl-hts

Perl XS wrapper for htslib

prototype.node.js

Prototype.js implemented in Node.js

psga-pipeline-sars-cov-2

Repository for Pathogen Sequence Genome Analysis Sars CoV 2 pipeline

psga-reusable-workflows

PSGA shared and reusable GitHub Action workflows

pysam

Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.