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cpockrandt's Projects

db-prices icon db-prices

Find journey prices using the DB Sparpreise API.

genmap icon genmap

GenMap - Fast and Exact Computation of Genome Mappability

helm-charts icon helm-charts

:wheel_of_dharma: A community repository for Helm Charts of OpenSearch Project.

kmc icon kmc

Fast and frugal disk based k-mer counter

krakenuniq icon krakenuniq

🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results

mmseqs2 icon mmseqs2

MMseqs2: ultra fast and sensitive search and clustering suite

optimalsearchscheme icon optimalsearchscheme

MIP Code and Computational Experiment Code for the article "Optimum Search Schemes for Approximate String Matching Using Bidirectional FM-Index"

phylocsfpp icon phylocsfpp

PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF files with PhyloCSF and confidence scores.

sdsl-lite icon sdsl-lite

Succinct Data Structure Library 3.0 (unstable, prerelease)

seqan icon seqan

SeqAn's official repository.

seqan3 icon seqan3

The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.

tiebrush icon tiebrush

summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)

wfa icon wfa

Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment

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