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followers: 2.5K following: 42.0 repos: 162.0 gists: 114.0

Name: Ming Tang

Type: User

Company: Immunitas

Bio: Director of Computational Biology at Immunitas working on single-cell RNAseq. Care about reproducible research and open science

Location: Waltham, MA

Blog: http://divingintogeneticsandgenomics.com

Hi there 👋

I have over 12 years of computational biology experience, 6 years of molecular cancer biology and 4 years of immunology experience.
I am a computational biologist working on (single-cell) genomics, epigenomics and (spatial) transcriptomics.
I use machine learning approaches to find new drug targets for cancer patients;
I use google cloud and Terra for large scale data processing;
I use R primary for data wrangling and visualization in the tidyverse ecosystem;
I use python for writing Snakemake workflows and reformatting data;
I am a unix geek learning shell tricks almost every month; I care about reproducible research and open science.

Learn more about me at https://tommytang.bio.link/

Join my FREE newsletter to learn computational biology https://divingintogeneticsandgenomics.ck.page/newsletter

Subscribe to my chatomics youtube channel https://www.youtube.com/@chatomics

You do not need to do a master's degree to learn computational biology. Grab my book to learn computation at here

Ming Tang's Projects

10x-scatac-2019

Code Repository for Satpathy Granja et al 2019

2019-snakemake-harvard-informatics-nanocourse

Intro to workflows for efficient automated data analysis, using snakemake.

450k-analysis-guide

A Practical (And Opinionated) Guide To Analyzing 450K Data

angus

Materials for Analyzing Next-Generation Sequencing (ANGUS) course.

awesome-expression-browser

😎 A curated list of software and resources for exploring and visualizing (browsing) expression data 😎

awesome-long-reads

tools and notes for long reads analysis

awesome-single-cell-proteomics

awesome_spatial_omics

tools and notes for spatial omics

batchit

simple jobs submission via command-line for AWS batch

bds-files

Supplementary files for my book, "Bioinformatics Data Skills"

binder_tutorial

Continuing to work on the Binder documentation we started at CarpentryConnect Davis breakout sessions

bioinformatics-one-liners

Bioinformatics one liners from Ming Tang

bioinformatics-workflows

minimal example implementations for bioinformatics workflow managers

biostar-tutorials

Code for biostar tutorials - mostly R and Perl

biotech_resource

some resources for startup companies

book

Compiled and pretty version of labs (updated with a bit of lag)

bookdown-demo

A minimal book example using bookdown

building-data-products

centipede.tutorial

How to use CENTIPEDE to determine if a transcription factor is bound.

charting_human_biology_using_ai

A template for course websites developed with Quarto and hosted on GitHub

chip-seq-analysis

ChIP-seq analysis notes from Ming Tang

chip-seq-carpentry

Development of the ChIPseq workshop for Data Carpentry

chip-seq-pipeline

ENCODE Uniform processing pipeline for ChIP-seq

chl-pbmc

chromosomemappings

This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.

cidc_single_cell

snakemake single cell pipeline for CIDC

clearmap

This is a Dulac Lab specific version of ClearMap forced from Lerner Lab

clearmap_data

ClearMap annotation and test data

clearmapdocker

This repo containerizes Christoph Kirst's ClearMap for Dulac lab

cloud_computing_resources

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