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acc_training_2018_bern

awesomedata

🙌 Smorgasbord of awesome data sets.

biomagdsb

This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 2018 competition

celligner

tumor - cancer cell line alignment. Use it on the depmap portal or install it with pip.

cellprofiler

An open-source application for biological image analysis

components

Piximi’s generic React components

cyto-graph

cytomining-hackathon-wiki

Cytomining Hackathon 2016

dcp_helper

Distributed Cell Profiler Helper Functions

drawer

Piximi’s Drawer component

hooks

Piximi’s generic React hooks

image-js

Image processing and manipulation in JavaScript

in-silico-labeling

Code for In silico labeling: Predicting fluorescent labels in unlabeled images

invasivegrowth

keras-rcnn

Keras package for region-based convolutional neural networks (RCNNs)

labelfree-cellpainting

Label-free Cell Painting

mlgoc_cellprofiler2_module

mlgoc_cellprofiler_module

modal

A modular active learning framework for Python3

modal.js

A modular active learning framework for tensorflow.js, enabling interactive data annotation for web-based applications.

models

Piximi’s TensorFlow.js models

monusac

This repository contains my implementations of the algorithms which MoNuSAC participants could use for data preparation to train their models at ISBI 2020.

navigation-drawer

Piximi’s NavigationDrawer component

neubias_2018_ts7_hcs

General workflow for high content screening

neubias_analystschool2018

NEUBIAS Bioimage Analyst School Documentation

no-code-low-code

No Code Low Code Examples

piximi

a free, open-source web app for annotating, training, and evaluating image understanding algorithms

piximi-application

python

All Algorithms implemented in Python

pytorch_fnet

Three dimensional cross-modal image inference