cu-dbmi Goto Github PK

action-pr-test-3

A test repo to see why workflows submitted from forked PRs weren't running, please ignore

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

ccpm-io.github

A special GitHub repository for setting the CCPM-IO organization profile and default community health files.

center-notebooks

Python Jupyter notebooks for pre-production or one-off experiments.

dbmi_seminar

@cu-dbmi seminar committee material

demo-github-actions

This repository helps demonstrate various Github Actions capabilities.

demo-poetry-dynamic-semver-with-docker-hub-push

A demonstrational repository showing how Python Poetry dynamic versioning can be used to distribute Docker container images on Docker Hub for Python packages.

demo-python-memory-reference-accounting

Demonstrating Python memory allocator reference counting and debug.

example-hpc-alpine-python

Demonstrating the use of Python on Alpine, a High Performance Compute (HPC) cluster hosted by the University of Colorado Boulder's Research Computing.

gc-cloud-storage-bucket

Template for creating Cloud Storage bucket on Google Cloud.

healthcare-data-harmonization

This is an engine that converts data of one structure to another, based on a configuration file which describes how. There is an accompanying syntax to make writing mappings easier and more robust.

locust-k8s-loadtester

Distributed load testing using Kubernetes on Google Container Engine

mends-on-fhir

mondaydotcom-notebooks

Center-specific notebook logic, mostly with MDC data

mondaydotcom-utils

A collection of Monday.com utilities, many specific to our use.

notebooks

Demonstrational and shareable Jupyter notebooks deployed using JupyterLite on Github Pages.

omop-fhir-data

pmc-crawler

Crawls PMC for publications by specified authors

pycytominer-performance

Performance profiling to enhance and troubleshoot pycytominer

r-and-python-env-experiments

Exploring R and Python environment management.

redirects

redirects-website

Test out "chatroom" redirection link below:

reformed-k8s-demo

SET Office Hours Demo from 2022-08-17 on deploying Reformed to Kubernetes

research-lifecycle-template

A template for conducting scientific exploration using the research lifecycle and version control.

rtx-kg2

Build system for the RTX-KG2 biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)

rtx-kg2-gateway

Enabling RTX-KG2 data access through various means.

rxivist

API providing access to papers and authors scraped from biorxiv.org

set-effort-analysis

Data analysis on DBMI Software Engineering Team efforts.

set-intake

Request support from the Software Engineering Team

set-notegraph

Software engineering team notes.