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Hi, I am Cunliang Geng

Currently, I work at the Netherlands eScience Center, where I collaborate with scientists from universities and research institutes in the Netherlands, coding for open-source scientific projects in the life sciences and healthcare.

I am a research software engineer with a background in bioinformatics and computational biology. My passion lies in software engineering and machine learning, which I enjoy applying to solve scientific challenges.

🔥 Open-source projects I am working on:

  • Vantage6, a privacy preserving federated learning infrastructure for secure insight exchange.
  • NPLinker, a python framework for integrating multi-omics data to discover new microbial natural products.
  • STRAP, a microservice and tools to transform proprietary healthcare data into the standard FHIR format to facilitate self tracking for prevention and diagnosis of heart disease.

✅ Open-source projects I have contributed to:

  • DeepRank, a deep learning framework for data mining 3D protein-protein interfaces.
  • MatchMS, a python library for processing and similarity evaluation of mass spectrometry data.

Programming Languages

  • 🐍 Python
  • 🐒 TypeScript
  • 🐚 Shell script

Tooling

  • 🖥️ MacOS
  • 🌊 iTerm2
  • 🐠 ZSH + Oh My Zsh
  • 🦉 VS Code

Cunliang Geng's Projects

big-scape icon big-scape

Similarity networks of biosynthetic gene clusters

vantage6 icon vantage6

The main vantage6 repository: code for the central server, nodes, CLI and Python Client

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