Comments (2)
Hi @Telogen,
Thank you for your interest in our data. We used snapATAC to process the data, please refer to https://github.com/cxzhu/Paired-seq/blob/master/snapATAC_RNA.R and https://github.com/cxzhu/Paired-seq/blob/master/snapATAC_DNA.R, which is designed for lower-coverage datasets.
You can also find our latest data with higher coverage, which should be more compatible with the current Seurat and Signac, from https://ftp.ncbi.nlm.nih.gov/geo/series/GSE152nnn/GSE152020/suppl/GSE152020_Paired-Tag_RNA_filtered_matrix.tar.gz and https://ftp.ncbi.nlm.nih.gov/geo/series/GSE152nnn/GSE152020/suppl/GSE152020_Paired-seq_DNA_filtered_matrix.tar.gz
Best,
Chenxu
from paired-seq.
Thanks Dr. Zhu! I'll try it.
from paired-seq.
Related Issues (8)
- how to use this tool HOT 10
- Cannot open ref file HOT 2
- Lacking source files of function bam2Mtx HOT 2
- Hi, If I want to change BCs or Linker seqeunce slightly, which file should I change? HOT 5
- SRR8980188 full barcoded reads low. HOT 2
- High number of alignments suppressed during cell id alignment step
- maker gene of the cerebral cortex cells data HOT 1
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from paired-seq.