Davis Bennett's Projects
ExaSPIM pipeline components primarily to be installed in Code Ocean capsules
advent of code
AWS JavaScript S3 Explorer is a JavaScript application that uses AWS's JavaScript SDK and S3 APIs to make the contents of an S3 bucket easy to browse via a web browser.
my bash profile for the janelia compute cluster
Running compute-intense parts of BigStitcher distributed
Static file server with CORS via Caddy
Matlab: Cellular Automata Class
An implementation of Andy Lomas' Cellular Forms.
Scripts for building, training and validating CNNs for Connectomics
d-v-b
A truly remarkable website
A framework for easy application of established machine learning techniques on large, multi-dimensional images.
Parallel computing with task scheduling
Deploy Dask on job schedulers like PBS, SLURM, and SGE
Testing adaptive deployment for dask distributed on the Janelia HPC cluster
object-oriented representation of experimental data
Diffusion MR Imaging in Python
A distributed task scheduler for Dask
Utilities for DMD-based patterned illumination
my dotfiles
Jupyter notebook demonstrating fluorescence timeseries normalization (delta f over f, or dff) with a downsampled baseline
my emacs configuration
Pythonic tools for working with github gists
Enoki: structured vectorization and differentiation on modern processor architectures
Data wrangling demonstrations and how-tos
fastapi tutorial
Human-readable descriptions of our datasets
Tools for handling FIB-SEM data and annotations